Unlock the secret to deliciously high-protein, wonderfully chewy pumpkin bagel bites right in your air fryer! This incredibly easy recipe combines the wholesome goodness of Skyr-style yogurt with self-rising flour and the irresistible flavor of pumpkin, offering a perfect snack or a delightful sweet treat when topped with our simple pumpkin glaze. Prepare to be amazed by how quickly and effortlessly these autumnal delights come together, making them an instant fall favorite.

It’s truly remarkable how just a few simple ingredients can transform into such satisfying, higher-protein bagels. We initially fell in love with our original air fryer protein bagel recipe – seriously, they’re unbelievably good, especially with everything bagel seasoning! But our culinary curiosity couldn’t stop there. Inspired by the cozy flavors of autumn, we’ve returned with these utterly delectable pumpkin bagel bites. Using similar foundational ingredients, we’ve crafted them into perfectly portioned, bite-sized delights. With fall officially here in Minneapolis, it’s the ideal time to embrace all things pumpkin!
Why You’ll Love These Air Fryer Pumpkin Bagel Bites
These isn’t just another pumpkin recipe; it’s a game-changer for your fall snack lineup. Here’s why these pumpkin bagel bites will quickly become a household favorite:
- Effortlessly Easy: With minimal ingredients and a straightforward process, you’ll have these made in no time. Perfect for busy weeknights or weekend baking sessions.
- High in Protein: Thanks to the power of Skyr or Greek yogurt, these bagel bites pack a significant protein punch, keeping you fuller for longer.
- Chewy Perfection: The unique dough combination results in a wonderfully chewy texture, just like traditional bagels, but in a convenient mini size.
- Irresistible Fall Flavor: Infused with real pumpkin puree and aromatic pumpkin pie spice, every bite screams autumn comfort.
- Air Fryer Convenience: Cooking in the air fryer means a quick cook time, crispy exteriors, and less oil, making them a healthier indulgence.
- Versatile Treat: Enjoy them plain for a wholesome snack, or drizzle with our pumpkin glaze for a sweet, dessert-like experience.
Essential Ingredients for Your Pumpkin Bagel Bites
Crafting these delightful bagel bites requires only a handful of pantry staples. Each ingredient plays a crucial role in achieving that perfect chewy texture and rich pumpkin flavor.
- Self-Rising Flour: This is our flour of choice because it already contains leavening agents (baking powder and salt), simplifying the recipe. It reacts beautifully with the yogurt to create a light, airy, yet chewy dough.
- Plain Skyr Yogurt or Greek Yogurt: The star ingredient for that high-protein boost! We’ve successfully tested this recipe with both Skyr and Greek yogurt. Skyr typically offers a slightly higher protein content and a thicker consistency, with Painterland Sisters being a particular favorite brand. Both varieties contribute to the dough’s structure and protein profile.
- Pumpkin Puree: Naturally, these are pumpkin bagel bites! Unsweetened pumpkin puree adds moisture, a subtle natural sweetness, and that unmistakable autumn color and flavor directly into the dough. It blends seamlessly with the flour, yogurt, and spice.
- Pumpkin Pie Spice: A little goes a long way. Just one teaspoon of this warm spice blend infuses the bagel bites with quintessential fall aromas and flavors, making them truly irresistible.
- Egg: Used for an egg wash before air frying. This step is vital for achieving a beautiful golden-brown exterior and a delightful crispiness on the outside of your bagel bites.
No Self-Rising Flour? No Problem!
If your pantry doesn’t stock self-rising flour, you can easily create your own substitute. Simply use all-purpose flour and add baking powder. The general ratio is 1.5 teaspoons of baking powder per 1 cup of all-purpose flour. This will ensure your bagel bites still rise perfectly and maintain their delightful texture.
The Irresistible Pumpkin Glaze Ingredients
Pro tip: Seriously, don’t skip the glaze! While these pumpkin bagel bites are undoubtedly delicious on their own, a touch of sweetness from this easy glaze elevates them to an entirely new level of deliciousness. It transforms them from a simple snack into a truly indulgent treat, perfect for breakfast, dessert, or a cozy afternoon pick-me-up. All you’ll need is:
- Powdered Sugar: The base of our smooth, sweet glaze. It dissolves easily, ensuring a silky finish.
- Milk (Any Kind): A small amount of milk helps achieve the perfect drizzling consistency. Feel free to use dairy milk or any plant-based alternative you prefer.
- Pumpkin Pie Spice: A hint of extra pumpkin pie spice in the glaze ties all the flavors together, complementing the bagel bites beautifully.
In addition to these core ingredients, you’ll also need a reliable air fryer, parchment paper for easy cleanup and to prevent sticking, and a pastry brush for applying the egg wash.

Our Favorite
Air Fryer Pick
Still searching for the ideal air fryer? We highly recommend the Ninja Kitchen Air Fryer. It’s celebrated for its consistent performance, durability, and excellent value, making it a fantastic choice for both novice and experienced home cooks.
Frequently Asked Questions About Your Bagel Bites
What can I use if I don’t have Skyr-style yogurt?
No Skyr? No problem! Classic Greek yogurt is a fantastic substitute and will work just as well in this recipe. For the best texture and richness, we always recommend using a higher-fat yogurt, such as 2% or 5% milkfat. The extra fat content contributes to a more tender and satisfying bagel bite.
Can I use gluten-free flour for this recipe?
Unfortunately, we do not recommend using gluten-free flour for these bagel bites. We have rigorously tested this recipe with popular gluten-free flour blends, including Bob’s Red Mill 1:1 GF flour, and found that it does not yield the same chewy and desirable texture that makes these bagel bites so special. The unique protein structure created by the interaction of traditional flour and yogurt is key to this recipe’s success.
Tips for Achieving the Perfect Dough Consistency
The key to these amazing bagel bites lies in the dough. When mixing the flour, yogurt, pumpkin puree, and pumpkin pie spice, aim for a smooth, cohesive ball. If the dough feels too sticky to handle, add a small amount of additional self-rising flour, about a tablespoon at a time, until it reaches a manageable consistency. Conversely, if it seems too dry or crumbly, a tiny splash of milk (½ teaspoon at a time) can help bring it together. Don’t over-knead; a minute or two of gentle mixing is usually sufficient once the ingredients are combined. The dough should be soft but not cling excessively to your hands.
Air Frying for Golden Perfection
Air fryers vary in wattage and efficiency, so cook times can sometimes differ. While 8-10 minutes at 350°F is a general guideline, keep an eye on your bagel bites. They should be golden brown and feel firm to the touch. For best results, avoid overcrowding the air fryer basket; cook in batches if necessary to ensure even air circulation and consistent crispiness. Placing them in a single layer on parchment paper is crucial for proper cooking.
Storage and Reheating
While these pumpkin bagel bites are truly at their best when enjoyed fresh and warm from the air fryer, any leftovers can be stored for later enjoyment. Allow them to cool completely to room temperature before transferring them into an airtight container. Refrigerate for up to 3-4 days.
For the freshest experience, we recommend waiting to apply the delicious pumpkin glaze until you are ready to serve any leftover bagel bites. This prevents the glaze from becoming soggy and helps maintain the bagel bites’ texture.
How to reheat: To bring your pumpkin bagel bites back to life, simply air fry them at 400ºF for 1-2 minutes, or until warmed through and slightly crisp again. Alternatively, a toaster oven or microwave can be used, though the air fryer offers the best texture.
Air Fryer Pumpkin Bagel Bites
These air fryer pumpkin bagel bites are destined to become your go-to fall treat! Crafted with simple ingredients and air-fried to perfection in just 8 minutes, they offer a quick, healthy, and incredibly flavorful way to enjoy the tastes of autumn.
By: Emily Richter
Prep: 10 mins
Cook: 8 mins
Total: 18 mins
Servings: 4

Print Recipe
Ingredients
Dough
- 1 cup self-rising flour (or 1 cup all-purpose flour + 1.5 teaspoons baking powder)
- ⅔ cup plain Skyr yogurt (Greek yogurt works well too)
- 4 tablespoons unsweetened pumpkin puree
- 1 teaspoon pumpkin pie spice
- 1 large egg, whisked (for egg wash)
Glaze
- ¼ cup powdered sugar
- 1 teaspoon milk (any type)
- ¼ teaspoon pumpkin pie spice
Instructions
- Preheat your air fryer to 350ºF (175ºC).
- In a mixing bowl, combine the self-rising flour, plain yogurt, pumpkin puree, and pumpkin pie spice. Mix thoroughly using your hands until a smooth dough ball forms. If the dough is too sticky, add more flour (1 tablespoon at a time) until it’s easy to handle.
- Divide the dough into 12 equal pieces, each roughly 1 to 1.5 tablespoons in size. Roll each piece into a smooth ball. Brush each ball generously with the whisked egg for a golden finish.
- Line your air fryer basket with parchment paper. Carefully arrange the bagel bites in the basket, ensuring they are not touching each other to allow for even cooking. You may need to cook them in batches.
- Air fry at 350ºF (175ºC) for 8-10 minutes, or until golden brown and cooked through. Cooking time may vary depending on your air fryer model and the size of your bagel bites.
- While the bagel bites are cooking, prepare the glaze. In a small bowl, whisk together the powdered sugar, milk, and pumpkin pie spice until smooth and lump-free. Set aside.
- Once the bagel bites are finished, remove them from the air fryer and transfer them to a plate. Drizzle generously with the prepared pumpkin glaze. Serve warm and enjoy immediately!
Tips & Notes
- Flour Substitution: If self-rising flour isn’t available, simply combine 1 cup of all-purpose flour with 1.5 teaspoons of baking powder to create your own.
- Yield & Serving Size: This recipe makes 12 delicious bagel bites. A recommended serving size is 3 bagel bites.
- Yogurt Choice: We highly recommend Skyr yogurt (Painterland Sisters is a favorite) for its naturally high protein content and thick texture. However, any full-fat Greek yogurt will also yield excellent results, contributing to the chewiness and protein of the bites.
- Dough Consistency Check: When assessing dough stickiness in step 2, it’s helpful to rinse your hands clean and then lightly knead the dough. If it still clings excessively, incorporate more flour gradually.
- Gluten-Free Advisory: We’ve found that gluten-free flours do not produce the desired texture for this recipe.
- Air Fryer Variations: Cooking times can differ based on your specific air fryer model and the exact size of your bagel bites. Begin checking for doneness around the 8-minute mark.
- Nutrition Note: The provided nutrition information for this recipe does not include the glaze.
Nutrition
Calories: 157 kcal, Carbohydrates: 27 g, Protein: 8 g, Fat: 2 g, Fiber: 1 g, Sugar: 2 g
Nutrition information is automatically calculated and should only be used as an approximation. Exact values may vary based on specific ingredients and brands used.
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